{"id":532,"date":"2020-01-27T10:50:35","date_gmt":"2020-01-27T10:50:35","guid":{"rendered":"http:\/\/myklebost.w.uib.no\/?p=532"},"modified":"2023-03-23T12:18:59","modified_gmt":"2023-03-23T12:18:59","slug":"publications-2020","status":"publish","type":"post","link":"https:\/\/myklebost.w.uib.no\/en\/2020\/01\/27\/publications-2020\/","title":{"rendered":"Publications 2020"},"content":{"rendered":"

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Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA; PCAWG Structural Variation Working Group; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet.<\/u><\/em><\/strong> 52:294-305. doi: 10.1038\/s41588-019-0564-y<\/div>\n
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Alexandrov LB, Kim J, Haradhvala NJ, Huang MN, Tian Ng AW, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN, Islam SMA, Lopez-Bigas N, Klimczak LJ, McPherson JR, Morganella S, Sabarinathan R, Wheeler DA, Mustonen V; PCAWG Mutational Signatures Working Group; Getz G, Rozen SG, Stratton MR; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) The repertoire of mutational signatures in human cancer. Nature<\/u><\/em><\/strong> 578:94-101. doi: 10.1038\/s41586-020-1943-3<\/div>\n
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Bailey MH, Meyerson WU, Dursi LJ, \u00a0\u2026.., Gerstein MB, Ding L & PCAWG Consortium [including Bjerkehagen B, Myklebost O, Zaikova O<\/b>] (2020<\/b>) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples Nature Communications<\/u><\/b> volume 11, Article number: 4748 DOI:\u00a010.1038\/s41467-020-18151-y \u00a0\"\"<\/a><\/span><\/p>\n

Bhandari V, Li CH, Bristow RG, Boutros PC; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Divergent mutational processes distinguish hypoxic and normoxic tumours. Nat Commun.<\/u><\/em><\/strong> 11:737. doi: 10.1038\/s41467-019-14052-x \"\"<\/span><\/p>\n

Carlevaro-Fita J, Lanz\u00f3s A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JS; PCAWG Drivers and Functional Interpretation Group; Johnson R; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong>Myklebost O<\/strong>] (2020<\/strong>) Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Commun Biol<\/em><\/strong>. 3:56. doi: 10.1038\/s42003-019-0741-7 \"\"<\/span><\/p>\n

Cmero M, Yuan K, Ong CS, Schr\u00f6der J; PCAWG Evolution and Heterogeneity Working Group; Corcoran NM, Papenfuss T, Hovens CM, Markowetz F, Macintyre G; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Inferring structural variant cancer cell fraction. Nat Commun<\/u><\/em><\/strong>. 11:730. doi: 10.1038\/s41467-020-14351-8 \"\"<\/span><\/p>\n

Cort\u00e9s-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group; Park PJ; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet.<\/u><\/em><\/strong> 52:331-341. doi: 10.1038\/s41588-019-0576-7<\/p>\n

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D\u00f6rnen J, Myklebost O<\/b>, Dittmar (2020<\/b>) Cell Fusion of Mesenchymal Stem\/Stromal Cells and Breast Cancer Cells leads to the Formation of Hybrid Cells exhibiting diverse and individual (stem cell) Characteristics. International Journal of Molecular Sciences <\/b>https:\/\/doi.org\/10.3390\/ijms21249636<\/a> \"\"<\/a><\/i><\/span><\/div>\n
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Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, V\u00e1zquez-Garc\u00eda I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD; PCAWG Evolution & Heterogeneity Working Group; Spellman PT, Wedge DC, Van Loo P; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) The evolutionary history of 2,658 cancers. Nature\u00a0<\/u><\/em><\/strong>578:122-128. doi: 10.1038\/s41586-019-1907-7<\/p>\n

Jiao W, Atwal G, Polak P, Karlic R, Cuppen E; PCAWG Tumor Subtypes and Clinical Translation Working Group; Danyi A, de Ridder J, van Herpen C, Lolkema MP, Steeghs N, Getz G, Morris QD, Stein LD; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nat Commun.<\/u><\/em><\/strong>11:728. doi: 10.1038\/s41467-019-13825-8 \"\"<\/span><\/p>\n

Li CH, Prokopec SD, Sun R, Yousif F, Schmitz N, PCAWG Tumour Subtypes and Clinical Translation, Boutros PC, PCAWG Consortium (Including Bjerkehagen B, Myklebost O, Zaikova O<\/strong>) (2020<\/strong>) Sex differences in oncogenic mutational processes. Nature Communications<\/strong> 11:4330 DOI: 10.1038\/s41467-020-17359-2 \"\"<\/span><\/a><\/p>\n

Li Y, Roberts ND, Wala JA, Shapira O, Schumacher SE, Kumar K, Khurana E, Waszak S, Korbel JO, Haber JE, Imielinski M; PCAWG Structural Variation Working Group; Weischenfeldt J, Beroukhim R, Campbell PJ; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Patterns of somatic structural variation in human cancer genomes. Nature<\/u><\/em><\/strong> 578:112-121. doi: 10.1038\/s41586-019-1913-9<\/p>\n

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Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC; PCAWG Drivers and Functional Interpretation Working Group; Reimand J; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Integrative pathway enrichment analysis of multivariate omics data. Nat Commun<\/u><\/em><\/strong>. 11:735. doi: 10.1038\/s41467-019-13983-9 \"\"<\/span><\/p>\n

PCAWG Transcriptome Core Group; Calabrese C, Davidson NR, Demircio\u011flu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, Bailey P, Erkek S, Hoadley KA, Hou Y, Huska MR, Kilpinen H, Korbel JO, Marin MG, Markowski J, Nandi T, Pan-Hammarstr\u00f6m Q, Pedamallu CS, Siebert R, Stark SG, Su H, Tan P, Waszak SM, Yung C, Zhu S, Awadalla P, Creighton CJ, Meyerson M, Ouellette BFF, Wu K, Yang H; PCAWG Transcriptome Working Group; Brazma A, Brooks AN, G\u00f6ke J, R\u00e4tsch G, Schwarz RF, Stegle O, Zhang Z; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Genomic basis for RNA alterations in cancer. Nature<\/u><\/em><\/strong> 578:129-136. doi: 10.1038\/s41586-020-1970-0<\/p>\n

Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A; PCAWG Drivers and Functional Interpretation Working Group; Reimand J, Stuart JM, Raphael BJ; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Pathway and network analysis of more than 2500 whole cancer genomes. Nat Commun.<\/u><\/em><\/strong> 11:729. doi: 10.1038\/s41467-020-14367-0 \"\"<\/span><\/p>\n

Rheinbay E, Nielsen MM, Abascal F, \u2026 ; PCAWG Drivers and Functional Interpretation Working Group; PCAWG Structural Variation Working Group; Weischenfeldt J, Beroukhim R, Martincorena I, Pedersen JS, Getz G; PCAWG Consortium \u00a0[Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature<\/u><\/em><\/strong> 578:102-111. doi: 10.1038\/s41586-020-1965-x<\/p>\n

Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, \u2026, PCAWG Structural Variation Working Group; Campbell PJ, Tubio JMC; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong>Myklebost O<\/strong>] (2020<\/strong>) Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet.<\/u><\/em><\/strong> 52:306-319. doi: 10.1038\/s41588-019-0562-0<\/p>\n

Rubanova Y, Shi R, Harrigan CF, Li R, Wintersinger J, Sahin N, Deshwar AG; PCAWG Evolution and Heterogeneity Working Group; Morris QD; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong>Myklebost O<\/strong>] (2020<\/strong>) Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig. Nat Commun.<\/u><\/em><\/strong> 11:731. doi: 10.1038\/s41467-020-14352-7 \"\"<\/span><\/p>\n

Serguienko A<\/span><\/b>, Braadland P, Meza-Zepeda LA<\/b>, Bjerkehagen B, Myklebost O<\/b> (2020<\/b>) Accurate 3-gene-signature for early diagnosis of liposarcoma progression. Clinical Sarcoma Research\u00a0<\/b>10:4 DOI: 10.1186\/s13569-020-0126-1<\/a>. \"\"<\/span><\/p>\n

Shuai S; PCAWG Drivers and Functional Interpretation Working Group; Gallinger S, Stein LD; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nat Commun.<\/u><\/em><\/strong> 11:734. doi: 10.1038\/s41467-019-13929-1\u00a0\"\"<\/span><\/p>\n

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cort\u00e9s-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M; PCAWG-Structural Variation Working Group; Brors B, Rippe K, Jones DTW, Feuerbach L; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O<\/strong>] (2020<\/strong>) Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun.<\/u><\/em><\/strong> 11:733. doi: 10.1038\/s41467-019-13824-9\"\"<\/span><\/p>\n

The ICGC\/TCGA Pan-Cancer Analysis of Whole Genomes Consortium [Incl\u00a0Bjerkehagen B,<\/strong> Myklebost O, Zaikova O<\/strong>] (2020<\/strong>) Pan-cancer analysis of whole genomes. Nature<\/strong> 578:82\u201393 doi:10.1038\/s41586-020-1969-6<\/a>\u00a0 \"\"<\/span><\/p>\n

Wise JF, Nakken S, Steen CB, Vod\u00e1k D, Tr\u00f8en G, Johannessen B, Lingj\u00e6rde OC, Hilden V, Blaker YN, Bai B, Aasheim LB, Pasanen A, Lorenz S, Sveen A, Lothe RA, Myklebost O<\/b>, Lepp\u00e4 S, Meza-Zepeda LA<\/b>, Beiske K, Lawrence MS, Hovig E, Myklebust JH, Smeland EB, Holte H (2020<\/b>) Mutational Dynamics and Immune Evasion in Diffuse Large B-cell Lymphoma: A Call for Relapse Sampling Blood Adv <\/b>12;4(9):1859-1866. doi: 10.1182\/bloodadvances.2019001325<\/a>.\u00a0\"\"<\/i><\/span><\/p>\n

Yakneen S, Waszak SM; PCAWG Technical Working Group; Gertz M, Korbel JO; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol.<\/u><\/em><\/strong> 38:288-292. doi: 10.1038\/s41587-019-0360-3<\/p>\n

Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) Comprehensive molecular characterization of mitochondrial genomes in human cancers. Nat Genet.<\/u><\/em><\/strong> 52:342-352. doi: 10.1038\/s41588-019-0557-x<\/p>\n

Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A; PCAWG Transcriptome Working Group; PCAWG Structural Variation Working Group; Creighton CJ; PCAWG Consortium [Including Zaikova O, Bjerkehagen B,<\/strong> Myklebost O<\/strong>] (2020<\/strong>) High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nat Commun.<\/u><\/em><\/strong> 11:736. doi: 10.1038\/s41467-019-13885-w \"\"<\/span><\/p>\n

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Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA; PCAWG Structural Variation Working Group; PCAWG Consortium [Including Zaikova O, Bjerkehagen B, Myklebost O] (2020) Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet. 52:294-305. doi: 10.1038\/s41588-019-0564-y Alexandrov LB, Kim … Continue reading Publications 2020<\/span><\/a><\/p>\n","protected":false},"author":3681,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_exactmetrics_skip_tracking":false,"_exactmetrics_sitenote_active":false,"_exactmetrics_sitenote_note":"","_exactmetrics_sitenote_category":0,"footnotes":""},"categories":[15904],"tags":[],"class_list":["post-532","post","type-post","status-publish","format-standard","hentry","category-publikasjoner"],"_links":{"self":[{"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/532","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/users\/3681"}],"replies":[{"embeddable":true,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/comments?post=532"}],"version-history":[{"count":38,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/532\/revisions"}],"predecessor-version":[{"id":847,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/532\/revisions\/847"}],"wp:attachment":[{"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/media?parent=532"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/categories?post=532"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/myklebost.w.uib.no\/en\/wp-json\/wp\/v2\/tags?post=532"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}